Considerations Regarding RNA Extraction Kits for SARS-CoV-2 Detection

The novel coronavirus disease (COVID-19) pandemic continues to trigger rapid development of molecular diagnostic tests around the world.

Nucleic acid amplification-based tests (NAATs)—such as real-time PCR and isothermal amplification—are the gold standard in molecular diagnostic technologies that are being utilized to detect SARS-CoV-2, the COVID-19 disease-causing virus.1

There are two critical and sequential steps that must occur prior to running a SARS-CoV-2 NAAT. The first is proper sample collection per the CDC’s guidelines,2 because inadequate collection may lead to inaccurate or inconclusive diagnostic results. The second is effective viral RNA extraction. The CDC has qualified and validated several extraction systems for use with their 2019-nCoV real-time RT-PCR Diagnostic Panel,3 including systems from Qiagen, Roche, and Biomerieux, but the rapid increase in testing has led to a global shortage of commercially available extraction kits. Consequently, lab test sites need to explore alternative vendors for extraction kits to qualify and validate with their respective NAAT.

Most commercial RNA extraction kits utilize similar principles for RNA extraction, with guanidine thiocyanate being the most popular chaotropic agent to lyse the virus, denature RNases, and protect RNA from degradation. These kits often include additional protocol steps, some designated as optional to improve purity, yield, or analyte detection. When selecting an RNA extraction kit, remember that SARS-CoV-2 is an RNA virus, and thus requires protection from RNases. Understanding the kit reagents and protocol will help ensure quality RNA extraction and reproducible results.

Luminex’s ARIES® SARS-CoV-2 Assay uses a sample-to-answer PCR platform that performs nucleic acid extraction, target amplification, and detection. It is one of the commercially available NAATs on the market.

Jackie Surls, PhD, is a Development & Applications Scientist at Luminex Corporation.


References

  1. “Coronavirus Test Tracker: Commercially Available COVID-19 Diagnostic Tests.” Genome Web (Internet). Cited Mar 2020. Available from: https://www.360dx.com/coronavirus-test-tracker-launched-covid-19-tests.
  2. “Interim Guidelines for Collecting, Handling, and Testing Clinical Specimens from Persons for Coronavirus Disease 2019 (COVID-19).” The Centers for Disease Control and Prevention (Internet). Cited Mar 2020. Available from: https://www.cdc.gov/coronavirus/2019-ncov/lab/guidelines-clinical-specimens.html.
  3. “CDC 2019-Novel Coronavirus (2019-nCoV) Real-Time RT-PCR Diagnostic Panel.” The Centers for Disease Control and Prevention (Internet). Cited Mar 2020. Available from: https://www.fda.gov/media/134922/download.

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Learn more about Luminex's SARS-CoV-2 testing solutions here.

Webinar: Mouse Model Analysis Is Better with Multiplexing

Query hundreds of immunoassay targets, even with limited sample volume

To make the most of immunology-focused assays using the limited tissue and fluid samples available from mouse models, scientists should consider using xMAP® Technology from Luminex, according to Daniel Braunschweig, Proteomics Field Application Scientist Leader at Bio-Rad Laboratories.

That’s the takeaway from a 30-minute webinar hosted by Labroots, which is now available for on-demand viewing and offers continuing education credits. In the presentation, Braunschweig spoke about getting the most out of bead-based multiplexing, experimental considerations, and key attributes for multiplex assays.

Variability in Mouse Models

Mouse models represent a $2 billion industry, Braunschweig noted, in part because they’re a mainstay for pharmaceutical R&D and are accepted models even for cutting-edge treatments such as immunotherapies and cell or gene therapies. Knock-out strains and assay content are readily available. However, variety among mouse strains, experimental design, and interpretation processes can lead to inherent variability when dealing with this type of data, he added.

Generating Data with Minimal Biological Sample

Perhaps the biggest challenge in working with mouse models, though, is that tissues and fluids are precious because they’re available in such small volumes. Because of this, researchers require cost-effective platforms with high sensitivity and specificity, comprehensive results, and strong reproducibility, Braunschweig said. He noted that xMAP Technology meets all of those criteria, generating data from potentially hundreds of targets per sample, even when there’s minimal sample to use. Automated multiplexing also reduces hands-on time and minimizes variability across experiments.

The webinar also introduces viewers to key experimental considerations, such as how analyte profiles differ by mouse age or tissue type, and assay attributes, including a large dynamic range and the ability to profile entire biological pathways.

If you work with mouse models and need immunoassay data, be sure to carve out a little time for this informative webinar.


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